Septic System Do’s and Don’ts after Flooding

Septic System Do’s and Don’ts after Flooding


During and after floods or heavy rains, the soil in your septic system drainfield can become waterlogged. For your septic system to treat wastewater, water needs to drain freely in the drainfield. Special care needs to be taken with your septic system under flood conditions.

A conventional septic system is made up of a septic tank (a watertight container buried in the gound) and a drainfield. Image: Soil and Water Science Lab UF/IFAS GREC.

A conventional septic system is made up of a septic tank and a drainfield or leach field. Wastewater flows from the septic tank into the drainfield, which is typically made up of a distribution box (to ensure the wastewater is distributed evenly) and a series of trenches or a single bed with perforated PVC pipes. Wastewater seeps from these pipes into the surrounding soil. Most wastewater treatment occurs in the drainfield soil. When working properly, many contaminants, like harmful bacteria, are removed through die-off, filtering and interaction with soil surfaces.

What should you do if flooding occurs?

The U.S. Environmental Protection Agency (EPA) offers these guidelines:

  1. Relieve pressure on the septic system by using it less or not at all until floodwaters recede and the soil has drained. Under flooded conditions, wastewater can’t drain in the drainfield and can back up in your septic system and household drains. Clean up floodwater in the house without dumping it into the sinks or toilet. This adds additional water that an already saturated drainfield won’t be able to process. Remember that in most homes all water sent down the pipes goes into the septic system.
  2. Avoid digging around the septic tank and drainfield while the soil is waterlogged. Don’t drive vehicles or equipment over the drainfield. Saturated soil is very susceptible to compaction. By working on your septic system while the soil is still wet, you can compact the soil in your drainfield, and water won’t be able to drain properly. This reduces the drainfield’s ability to treat wastewater and leads to system failure.
  3. Don’t open or pump the septic tank if the soil is waterlogged. Silt and mud can get into the tank if it is opened and can end up in the drainfield, reducing its drainage capability. Pumping under these conditions can cause a tank to float or ‘pop out’ of the ground, and can damage inlet and outlet pipes.
  4. If you suspect your system has been damaged, have the tank inspected and serviced by a professional. How can you tell if your system is damaged? Signs include: settling, wastewater backs up into household drains, the soil in the drainfield remains soggy and never fully drains, a foul odor persists around the tank and drainfield.
  5. Keep rainwater drainage systems away from the septic drainfield. As a preventive measure, make sure that water from roof gutters doesn’t drain towards or into your septic drainfield. This adds an additional source of water that the drainfield has to process.
  6. Have your private well water tested if your septic system or well were flooded or damaged in any way. Your well water may not be safe to drink or use for household purposes (making ice, cooking, brushing teeth or bathing). You need to have it tested by the Health Department or other certified laboratory for total coliform bacteria and coli to ensure it is safe to use.

For more information on septic system maintenance after flooding, go to:

More information on having your well water tested can be found at:

More Information on conventional and advanced treatment septic systems can be found on the UF/IFAS Septic System website

Septic System Do’s and Don’ts after Flooding

After Flooding, Test Your Well Water

If your private well was damaged or flooded due to a hurricane or other heavy storm activity, your well water may not be safe to drink. Well water should not be used for drinking, cooking purposes, making ice, brushing teeth, or bathing until it is tested by a certified laboratory for total coliform bacteria and E. coli.

Residents should use bottled, boiled, or treated water until their well water has been tested and deemed safe.

  • Boiling: To make water safe for drinking, cooking, or washing, bring it to a rolling boil for at least one minute to kill organisms and then allow it to cool.
  • Disinfecting with bleach: If boiling isn’t possible, add 1/8 teaspoon or about 8 drops of fresh unscented household bleach (4 to 6% active ingredient) per gallon of water. Stir well and let stand for 30 minutes. If the water is cloudy after 30 minutes, repeat the procedure once.
  • Keep treated or boiled water in a closed container to prevent contamination.

NOTE: Use bottled water for mixing infant formula.

Where can you have your well water tested?

Contact your county health department for information on how to have your well water tested. Image: F. Alvarado Arce

Most county health departments accept water samples for testing. Contact your local department for information about what to have your water tested for (they may recommend more than just for bacteria), and how to collect and submit the sample.

Contact information for Florida Health Departments can be found here: County Health Departments – Location Finder

You can also submit samples to a certified commercial lab near you. Contact information for commercial laboratories that are certified by the Florida Department of Health are found here: Laboratories certified by FDOH. This site includes county health department labs, commercial labs, and university labs; you can search by county.

What should you do if your well water sample tests positive for bacteria?

The Florida Department of Health recommends well disinfection if water samples test positive for total coliform bacteria or for both total coliform and E. coli, a type of fecal coliform bacteria.

You can hire a local licensed well operator to disinfect your well, or if you feel comfortable, you can shock chlorinate the well yourself.

You can find information on how to shock chlorinate your well at:

After well disinfection, you will need to have your well water re-tested to make sure it is safe to use. If it tests positive again for total coliform bacteria or both total coliform and E. coli, call a licensed well operator to have the well inspected to get to the root of the problem.

Well Pump and Electrical System Care

If the pump and/or electrical system have been underwater and are not designed to be used underwater, do not turn on the pump. There is a potential for electrical shock or damage to the well or pump. Stay away from the well pump while flooded to avoid electrical shock.

Once the floodwaters have receded and the pump and electrical system have dried, a qualified electrician, well operator/driller, or pump installer should check the wiring system and other well components.

Remember: You should have your well water tested any time:

  • A flood occurs and your well is affected
  • The color, taste, or odor of your well water changes or you suspect that someone became sick after drinking your well water.
  • A new well is drilled or you have had maintenance done on your existing well
  • There has been any type of chemical spill (pesticides, fuel, etc.) into or near your well

The Florida Department of Health maintains an excellent website with many resources for private well users: FDOH Private Well Testing and Other Resources includes information on potential contaminants and how to maintain your well to ensure the quality of your well water.